Welcome to TRIAGE R Package’s documentation!

This guide provides step-by-step instructions on using the TRIAGE R package for analysis of bulk and single cell transcriptomic data.

Contents:

• Installation
  • R Dependencies
  • Python Environment Setup
  • Knowledge Base
  • Installing TRIAGE R Package
• TRIAGEgene
  • Description
  • Input and Output
  • Parameters
  • Usage Examples
• TRIAGEcluster
  • Description
  • Input and Output
  • Parameters
  • Usage Examples
• TRIAGEparser
  • Description
  • Input and Output
  • Parameters
  • Usage Examples
• User-friendly Functions
  • plotJaccard
  • byPeak
  • topGenes
  • getClusterGenes
  • plotGO
• Testing TRIAGE
  • Test TRIAGEgene + plotJaccard()
  • Test TRIAGEcluster + byPeak() + topGenes()
  • Test TRIAGEparser + plotGO() + getClusterGenes()
• Case Study

Indices and tables

• Index

• Search Page